PMID
| BrainSpan Atlas | BrainSpan (brainspan.org) | Human | gene expression | RNA-seq | 24695229
|
| BrainSpan Atlas adult | BrainSpan (brainspan.org) | Human | gene expression | RNA-seq | 24695229
|
| CREST Human TF induction ESC 20181203.txt | DRA archive https://ddbj.nig.ac.jp/search/entry/sra-submission/DRA006296 | Human | gene expression | RNA-seq, microarrays | 32433964
|
| GNFv2 human tissues | BioGPS (biogps.org) GEO:GSE1133-GPL96 | Human | gene expression | microarrays | 18442421
|
| Human body index | Neurocrine Biosciences, Inc. GEO:GSE7307 | Human | gene expression | microarrays | 21794127
|
| Human cells RNAseq ENCODE | ENCODE Caltech GEO:GSE23316 | Human | gene expression | RNA-seq | 21037257
|
| Human ENCODE cell lines GSE30567 | ENCODE cell lines GEO: GSE30567 | Human | gene expression | RNA-seq | 22955974, 22955988
|
| Human tissues RNAseq GSE83115 | ENCODE tissues GEO: GSE83115 | Human | gene expression | RNA-seq | 27329541
|
| Human tissues GSE3526 | Neurocrine Biosciences, Inc. GEO:GSE3526 | Human | gene expression | microarrays | 16572319
|
| IGC human tissues | International Genomics Consortium (intgen.org) GEO:GSE2109 | Human | gene expression | microarrays |
|
| Illumina body map2 | EMBL European Bioinformatics Institute GEO:GSE30611 | Human | gene expression | RNA-seq |
|
| Knockdown 57 TFs GM19238 | Washington University GEO:GSE50588 | Human | gene expression | microarrays | 24603674
|
| Knockdown 400 genes human | University of Southern Denmark GEO:GSE27871 | Human | gene expression | microarrays | 22121215
|
| GNFv2 mouse tissues | BioGPS (biogps.org) GSE1133-GPL1073 PMID:18442421 | Mouse | gene expression | microarrays | 18442421
|
| GNFv3 mouse tissues | BioGPS (biogps.org) GSE10246 PMID:18442421 | Mouse | gene expression | microarrays | 18442421
|
| NIA induction 137 TFs mouse | National Institute on Aging GEO:GSE16375 | Mouse | gene expression | microarrays | 22355682, 19796622
|
| NIA induction 186 TFs mouse | National Institute on Aging GEO:GSE16375,GSE72350 | Mouse | gene expression | microarrays | 22355682, 27150017, 19796622
|
| NIA knockdown 100 TFs mouse | National Institute on Aging GEO:GSE26520 | Mouse | gene expression | microarrays | 23462645
|
| NIA preimplantation embryo | National Institute on Aging GEO:GSE936 | Mouse | gene expression | microarrays | 14723852
|
| Rat bodymap v2 | Fudan Univresity GEO:53960 | Rat | gene expression | RNA-seq | 24510058
|
| FlyAtlas Drosophila | University of Glasgow GSE:GSE7763 | Drosophila fly | gene expression | microarrays | 17534367
|
| Macaque brain GSE31613 | Allen Institute for Brain Science GEO:GSE31613 | Rhesus monkey | gene expression | microarrays | 22445337
|
| Dog tissues GSE20113-matrix | National Cancer Institute GEO:GSE20113 | Dog | gene expression | microarrays | 21655323
|
| Pig tissue GSE0898 | Universitat Autonoma Barcelona GEO:GSE10898 | Pig | gene expression | microarrays | 18416811
|
| Gene Ontology (GO) | Gene Ontology Consortium (geneontology.org) | Many species | gene set | curated annotation | 25428369
|
| GAD MGI phenotypes | Genetic Association Database PMID: 20092628 | Human, Mouse | gene set | curated annotation | 20092628
|
| MSIGDB genesets | Broad Institute (broadinstitute.org/gsea) | Many species | gene set | curated annotation | 16199517
|
| KEGG pathways | Extracted from MSIGDB (see above) | Many species | gene set | curated annotation | 16199517
|
| BIOCARTA pathway | Extracted from MSIGDB (see above) | Many species | gene set | curated annotation | 16199517
|
| REACTOME pathways | Extracted from MSIGDB (see above) | Many species | gene set | curated annotation | 16199517
|
| GNF2-coregulated | Extracted from MSIGDB (see above) | Many species | gene set | curated annotation | 16199517
|
| ART-TF regulated targets hg19 add all | DRA006296, GEO | Human | gene set | RNA-seq, microarrays | 36114445
|
| ART-TF regulated targets hg19 add direct | DRA006296, GEO | Human | gene set | RNA-seq, microarrays | 36114445
|
| ART-TF regulated targets hg19 add enhancers | DRA006296, GEO | Human | gene set | RNA-seq, microarrays | 36114445
|
| ART-TF regulated targets hg19 add promoters | DRA006296, GEO | Human | gene set | RNA-seq, microarrays | 36114445
|
| ART-TF targets hg19 enhancers add | DRA006296, GEO | Human | gene set | RNA-seq, microarrays | 36114445
|
| ART-TF targets hg19 promoters add | DRA006296, GEO | Human | gene set | RNA-seq, microarrays | 36114445
|
| PID pathways | Extracted from MSIGDB (see above) | Many species | gene set | curated annotation | 16199517
|
| MIR targets | Extracted from MSIGDB (see above) | Many species | gene set | curated annotation | 16199517
|
| Protein interaction | BioGRID, physical interaction (thebiogrid.org) | Many species | gene set | curated annotation | 25428363
|
| CREST signif 2fold MedEmerCag | DRA archive https://ddbj.nig.ac.jp/search/entry/sra-submission/DRA006296 | Human | gene set | RNA-seq, microarrays | 32433964
|
| TF Targets human ENCODE Q10 | encodedcc.sdsc.edu/ftp | Human | gene set | ChIP-seq | 25164757
|
| TF Targets mouse | National Institute on Aging (compiled from literature) | Mouse | gene set | ChIP-seq | 24918633
|
| StarBase v2 protein-RNA interaction | Sun Yat-sen University (starbase.sysu.edu.cn) | Human, Mouse | gene set | CLIP-seq | 21037263
|
